Below you find a selection of scientific publications that cite the VBASE2 database.

  • 2015

    • Gadala-Maria, Daniel, et al. "Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles." Proceedings of the National Academy of Sciences 112.8 (2015): E862-E870.

    • Chin, Siang Tean, et al. "Comparative study of IgA VH3 gene usage in healthy TST− and TST+ population exposed to tuberculosis: deep sequencing analysis." Immunology 144.2 (2015): 302-311.

    • Collins, Andrew M., et al. "The mouse antibody heavy chain repertoire is germline-focused and highly variable between inbred strains." Phil. Trans. R. Soc. B 370.1676 (2015): 20140236.

  • 2014

    • Wang, Jun, et al. "Engineering and characterization of a humanized antibody targeting TNF-α and RANKL." Biochemical and biophysical research communications 450.1 (2014): 717-722.

    • Leow, Chiuan Herng, et al. "Production and characterization of specific monoclonal antibodies binding the Plasmodium falciparum diagnostic biomarker, histidine-rich protein 2." Malar J 13 (2014): 277.

    • Lopez-Campos, Guillermo, et al. "Immunoinformatics and Systems Biology in Personalized Medicine." Immunoinformatics (2014): 457-475.

    • Calis, Jorg JA, and Brad R. Rosenberg. "Characterizing immune repertoires by high throughput sequencing: strategies and applications." Trends in Immunology 35.12 (2014): 581-590.

    • Martin, Andrew CR, and James Allen. "Bioinformatics Tools for Analysis of Antibodies." Handbook of Therapeutic Antibodies (2014): 201-228.

    • Dunbar, James, et al. "SAbDab: the structural antibody database." Nucleic acids research 42.D1 (2014): D1140-D1146.

    • Pauly, Diana, et al. "A novel antibody against human properdin inhibits the alternative complement system and specifically detects properdin from blood samples." PloS one 9.5 (2014): e96371.

  • 2013

    • Alonso-Camino, Vanesa, et al. "CARbodies: human antibodies against cell surface tumor antigens selected from repertoires displayed on T cell chimeric antigen receptors." Molecular Therapy—Nucleic Acids 2.5 (2013): e93.

    • Trott, M., et al. "Functional characterization of two scFv-Fc antibodies from an HIV controller selected on soluble HIV-1 Env complexes: a neutralizing V3-and a trimer-specific gp41 antibody." PloS one 9.5 (2013): e97478-e97478.

    • Tiller, Thomas, et al. "A fully synthetic human Fab antibody library based on fixed VH/VL framework pairings with favorable biophysical properties." MAbs. Vol. 5. No. 3. Taylor & Francis, 2013.

    • Ye, Jian, et al. "IgBLAST: an immunoglobulin variable domain sequence analysis tool." Nucleic acids research (2013): gkt382.

    • Fuchs, M., et al. "Novel human recombinant antibodies against Mycobacterium tuberculosis antigen 85B." BMC biotechnology 14.1 (2013): 68-68.

  • 2012

    • Kulkarni-Kale, Urmila, et al. "Genome to vaccinome: role of bioinformatics, immunoinformatics & comparative genomics." Current Bioinformatics 7.4 (2012): 454-466.

    • Lange, Hans, et al. "Immunoglobulin class switching appears to be regulated by B‐cell antigen receptor‐specific T‐cell action." European journal of immunology 42.4 (2012): 1016-1029.

    • Sotelo, Pablo H., et al. "An efficient method for variable region assembly in the construction of scFv phage display libraries using independent strand amplification." MAbs. Vol. 4. No. 4. Taylor & Francis, 2012.

    • Kuroda, Daisuke, et al. "Computer-aided antibody design." Protein Engineering Design and Selection 25.10 (2012): 507-522.

  • 2011

    • Chailyan, Anna, Anna Tramontano, and Paolo Marcatili. "A database of immunoglobulins with integrated tools: DIGIT." Nucleic acids research (2011): gkr806.

    • Sánchez-Martín, David, et al. "The multicompartmental p32/gClqR as a new target for antibody-based tumor targeting strategies." Journal of Biological Chemistry 286.7 (2011): 5197-5203.

    • Uduman, Mohamed, et al. "Detecting selection in immunoglobulin sequences." Nucleic acids research (2011): gkr413.

    • Cheng, Man, et al. "Construction and characterization of single-chain variable fragment antibody library derived from germline rearranged immunoglobulin variable genes." PloS one 6.11 (2011).

    • Yano, Masahide, and Liise-anne Pirofski. "Characterization of gene use and efficacy of mouse monoclonal antibodies to Streptococcus pneumoniae serotype 8." Clinical and Vaccine Immunology 18.1 (2011): 59-66.

    • Duzkale, Hatice, et al. "LDOC1 mRNA is differentially expressed in chronic lymphocytic leukemia and predicts overall survival in untreated patients." Blood 117.15 (2011): 4076-4084.

  • 2010

    • Lim, Theam Soon, et al. "V-gene amplification revisited–An optimised procedure for amplification of rearranged human antibody genes of different isotypes." New biotechnology 27.2 (2010): 108-117.

    • Hust, Michael, and Michael Mersmann. "Phage Display and Selection in Microtitre Plates." Antibody Engineering (2010): 139-149.

    • Olafsen, Tove, Vania E. Kenanova, and Anna M. Wu. "Generation of single-chain Fv fragments and multivalent derivatives scFv-Fc and scFv-CH3 (minibodies)." Antibody engineering (2010): 69-84.

    • Yu, Yanlan, et al. "A Humanized Anti-VEGF Rabbit Monoclonal Antibody Inhibits Angiogenesis and Blocks Tumor Growth in Xenograft Models." PLoS ONE 5.2 (2010).

    • Konoplev, Sergej N., et al. "High serum thymidine kinase 1 level predicts poorer survival in patients with chronic lymphocytic leukemia." American journal of clinical pathology 134.3 (2010): 472-477.

    • Xiao, F. S., et al. "Ig heavy chain genes and their locus in grass carp Ctenopharyngodon idella." Fish & shellfish immunology 29.4 (2010): 594-599.

    • Schirrmann, Thomas, and Michael Hust. "Construction of human antibody gene libraries and selection of antibodies by phage display." Immunotherapy of Cancer (2010): 177-209.

  • 2009

    • Schütte, Mark, et al. "Identification of a Putative Crf Splice Variant and Generation of Recombinant Antibodies for the Specific Detection of Aspergillus fumigatus." PLOS ONE 4.8 (2009): e6625.

    • Yin, C. Cameron, et al. "Chronic lymphocytic leukemia With t (2; 14)(p16; q32) involves the BCL11A and IgH genes and is associated with atypical morphologic features and unmutated IgVH genes." American journal of clinical pathology 131.5 (2009): 663-670.

    • Saldanha, José W. "Molecular engineering I: humanization." Handbook of therapeutic antibodies (2010): 119-144.

    • Bougie, Daniel W., et al. "Quinine-dependent, platelet-reactive monoclonals mimic antibodies found in patients with quinine-induced immune thrombocytopenia." Blood 113.5 (2009): 1105-1111.

    • Tian, Haijun, et al. "Efficacy of opsonic and nonopsonic serotype 3 pneumococcal capsular polysaccharide-specific monoclonal antibodies against intranasal challenge with Streptococcus pneumoniae in mice." Infection and immunity 77.4 (2009): 1502-1513.

    • Mollova, Svetlana. "Untersuchungen zur Verwendung der Next Generation Sequenziertechnologiefür die Analyse von Antikörpergenenbei Gesunden und Autoimmunpatienten." (2009) in German.

  • 2008

    • Lange, Hans, et al. "Thymus-independent type 2 antigen induces a long-term IgG-related network memory." Molecular immunology 45.10 (2008): 2847-2860.

    • Wang, Yan, et al. "Many human immunoglobulin heavy-chain IGHV gene polymorphisms have been reported in error." Immunology and cell biology 86.2 (2008): 111-115.

    • Kirsch, Martina I., et al. "Development of human antibody fragments using antibody phage display for the detection and diagnosis of Venezuelan equine encephalitis virus (VEEV)." BMC biotechnology 8.1 (2008): 66.

    • Messmer, Bradley T. "SAIVGeM: spreadsheet analysis of immunoglobulin V." BioTechniques 39.3 (2005): 353-358.